WormMine: Gene WBGene00014266

• WormBase Gene ID: WBGene00014266
• Gene Name: C28A5.7
• Sequence Name: C28A5.7
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by tdp-1 and mett-10 based on RNA-seq studies.
• Biotype: SO:0001268
• Genetic Position: :±
• Length (nt): 102

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00014266

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:C28A5.7	C28A5.7	102	III: 4426854-4426955

Other

0 CDSs

6 RNAi Result

• WBRNAi00051485
• WBRNAi00051486
• WBRNAi00018433
• WBRNAi00006782
• WBRNAi00006930
• WBRNAi00029291

3 Allele

• WBVar02120681
• gk317240
• gk778000

1 Chromosome

• WormBase ID: III
• Organism: Caenorhabditis elegans
• Length (nt): 13783801

1 Chromosome Location

• Feature . Primary Identifier: WBGene00014266
• Start: 4426854
• End: 4426955
• Strand: -1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

0 Downstream Intergenic Region

3 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Genes that are significantly down regulated in tdp-1(ok803) poly(A) RNA-seq verses in N2.	DESeq v1.14, with cut-off p-value < 0.05 and FDR < 0.1.	WBPaper00046012:tdp-1(ok803)_downregulated
	Transcripts that showed significantly decreased expression in VC1743[mett-10(ok2204)] comparing to in N2 when animals grow on standard (OP50) plates.	DESeq2, p-value < 0.05, fold change > 2.	WBPaper00061357:mett-10(ok2204)_downregulated_OP50
	Transcripts that showed significantly decreased expression in VC1743[mett-10(ok2204)] comparing to in N2 when animals grow on peptone-rich (NA22) plates.	DESeq2, p-value < 0.05, fold change > 2.	WBPaper00061357:mett-10(ok2204)_downregulated_NA22

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00014266
• Start: 4426854
• End: 4426955
• Strand: -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 102

1 Sequence Ontology Term