WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C28A5.1.1 Sequence Name  C28A5.1.1
Length (nt)  3781   Chromosome Location  III: 4429615-4434344
Chromosome . Primary Identifier  III Chromosome Location . Start  4429615
Chromosome Location . End  4434344 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C28A5.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007788 C28A5.1 C28A5.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C28A5.1 C28A5.1 3672   III: 4429724-4429765

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C28A5.1.1 4429615 4434344 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon85808   151   III: 4429615-4429765 Caenorhabditis elegans
Exon85809   172   III: 4429815-4429986 Caenorhabditis elegans
Exon85810   497   III: 4430035-4430531 Caenorhabditis elegans
Exon85811   84   III: 4430581-4430664 Caenorhabditis elegans
Exon85812   246   III: 4430717-4430962 Caenorhabditis elegans
Exon85813   79   III: 4431087-4431165 Caenorhabditis elegans
Exon85814   240   III: 4431212-4431451 Caenorhabditis elegans
Exon85815   804   III: 4431504-4432307 Caenorhabditis elegans
Exon85816   137   III: 4432358-4432494 Caenorhabditis elegans
Exon85817   103   III: 4432541-4432643 Caenorhabditis elegans
Exon85818   212   III: 4432690-4432901 Caenorhabditis elegans
Exon85819   198   III: 4433006-4433203 Caenorhabditis elegans
Exon85820   121   III: 4433250-4433370 Caenorhabditis elegans
Exon85821   176   III: 4433418-4433593 Caenorhabditis elegans
Exon85822   303   III: 4433643-4433945 Caenorhabditis elegans
Exon85823   66   III: 4433993-4434058 Caenorhabditis elegans
Exon85824   138   III: 4434104-4434241 Caenorhabditis elegans
Exon85826   54   III: 4434291-4434344 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C28A5.1.1 4429615 4434344 -1

1 Sequence

Length
3781

1 Sequence Ontology Term

Identifier Name Description
transcript