WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C28A5.2.1 Sequence Name  C28A5.2.1
Length (nt)  3771   Chromosome Location  III: 4434750-4439543
Chromosome . Primary Identifier  III Chromosome Location . Start  4434750
Chromosome Location . End  4439543 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C28A5.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007789 C28A5.2 C28A5.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C28A5.2 C28A5.2 3657   III: 4434864-4434905

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C28A5.2.1 4434750 4439543 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon85827   156   III: 4434750-4434905 Caenorhabditis elegans
Exon85828   172   III: 4434958-4435129 Caenorhabditis elegans
Exon85829   497   III: 4435186-4435682 Caenorhabditis elegans
Exon85830   84   III: 4435821-4435904 Caenorhabditis elegans
Exon85831   237   III: 4435950-4436186 Caenorhabditis elegans
Exon85832   79   III: 4436290-4436368 Caenorhabditis elegans
Exon85833   234   III: 4436417-4436650 Caenorhabditis elegans
Exon85834   804   III: 4436703-4437506 Caenorhabditis elegans
Exon85835   137   III: 4437557-4437693 Caenorhabditis elegans
Exon85836   103   III: 4437740-4437842 Caenorhabditis elegans
Exon85837   212   III: 4437889-4438100 Caenorhabditis elegans
Exon85838   198   III: 4438205-4438402 Caenorhabditis elegans
Exon85839   121   III: 4438449-4438569 Caenorhabditis elegans
Exon85840   176   III: 4438617-4438792 Caenorhabditis elegans
Exon85841   303   III: 4438842-4439144 Caenorhabditis elegans
Exon85842   66   III: 4439192-4439257 Caenorhabditis elegans
Exon85843   138   III: 4439303-4439440 Caenorhabditis elegans
Exon85844   54   III: 4439490-4439543 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C28A5.2.1 4434750 4439543 -1

1 Sequence

Length
3771

1 Sequence Ontology Term

Identifier Name Description
transcript