WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00014268 Gene Name  C28A5.t2
Sequence Name  ? C28A5.t2 Organism  Caenorhabditis elegans
Automated Description  Is affected by ogt-1 based on RNA-seq studies. Biotype  SO:0001272
Genetic Position  Length (nt)  ? 73
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00014268

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C28A5.t2 C28A5.t2 73   III: 4449533-4449605
 

Other

0 CDSs

23 RNAi Result

WormBase ID
WBRNAi00114159
WBRNAi00114237
WBRNAi00114039
WBRNAi00114118
WBRNAi00067956
WBRNAi00024659
WBRNAi00024660
WBRNAi00085861
WBRNAi00068815
WBRNAi00041390
WBRNAi00011286
WBRNAi00006771
WBRNAi00065477
WBRNAi00029290
WBRNAi00114274
WBRNAi00114197
WBRNAi00068755
WBRNAi00065478
WBRNAi00065479
WBRNAi00027192
WBRNAi00114001
WBRNAi00114080
WBRNAi00107175

2 Allele

Public Name
tm480
WBVar01827653

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00014268 4449533 4449605 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts depleted in purified oocyte P bodies comparing to in whole oocytes. DESeq2, FDR < 0.05, fold change > 2. WBPaper00065975:P-body_vs_oocyte_depleted
  Transcripts depleted in purified oocyte P bodies comparing to in the whole animal. DESeq2, FDR < 0.05, fold change > 2. WBPaper00065975:P-body_vs_WholeAnimal_depleted
  Transcripts that showed significantly decreased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_downregulated_neuron

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00014268 4449533 4449605 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
73

1 Sequence Ontology Term