WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F56F3.2a.1 Sequence Name  F56F3.2a.1
Length (nt)  2197   Chromosome Location  III: 4462839-4467377
Chromosome . Primary Identifier  III Chromosome Location . Start  4462839
Chromosome Location . End  4467377 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F56F3.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003577 ndg-4 F56F3.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F56F3.2a F56F3.2a 2064   III: 4462970-4463119

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F56F3.2a.1 4462839 4467377 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon85880   281   III: 4462839-4463119 Caenorhabditis elegans
Exon85881   143   III: 4463575-4463717 Caenorhabditis elegans
Exon85883   199   III: 4464100-4464298 Caenorhabditis elegans
Exon85885   139   III: 4464530-4464668 Caenorhabditis elegans
Exon85887   104   III: 4464716-4464819 Caenorhabditis elegans
Exon85889   262   III: 4464865-4465126 Caenorhabditis elegans
Exon85891   178   III: 4465374-4465551 Caenorhabditis elegans
Exon85893   294   III: 4465779-4466072 Caenorhabditis elegans
Exon85895   158   III: 4466180-4466337 Caenorhabditis elegans
Exon85897   91   III: 4466530-4466620 Caenorhabditis elegans
Exon85899   105   III: 4466669-4466773 Caenorhabditis elegans
Exon85901   243   III: 4467135-4467377 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F56F3.2a.1 4462839 4467377 -1

1 Sequence

Length
2197

1 Sequence Ontology Term

Identifier Name Description
transcript