WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F56F3.1.1 Sequence Name  F56F3.1.1
Length (nt)  3317   Chromosome Location  III: 4471411-4475150
Chromosome . Primary Identifier  III Chromosome Location . Start  4471411
Chromosome Location . End  4475150 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F56F3.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004132 ifet-1 F56F3.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F56F3.1 F56F3.1 2286   III: 4472435-4472517

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F56F3.1.1 4471411 4475150 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon85903   1107   III: 4471411-4472517 Caenorhabditis elegans
Exon85904   70   III: 4472564-4472633 Caenorhabditis elegans
Exon85905   81   III: 4472679-4472759 Caenorhabditis elegans
Exon85906   548   III: 4472805-4473352 Caenorhabditis elegans
Exon85907   840   III: 4473401-4474240 Caenorhabditis elegans
Exon85908   110   III: 4474287-4474396 Caenorhabditis elegans
Exon85909   86   III: 4474445-4474530 Caenorhabditis elegans
Exon85910   104   III: 4474581-4474684 Caenorhabditis elegans
Exon85911   191   III: 4474732-4474922 Caenorhabditis elegans
Exon85912   180   III: 4474971-4475150 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F56F3.1.1 4471411 4475150 -1

1 Sequence

Length
3317

1 Sequence Ontology Term

Identifier Name Description
transcript