WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:M88.6b.1 Sequence Name  M88.6b.1
Length (nt)  2197   Chromosome Location  III: 4562738-4566276
Chromosome . Primary Identifier  III Chromosome Location . Start  4562738
Chromosome Location . End  4566276 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
M88.6b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003915 pan-1 M88.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:M88.6b M88.6b 1785   III: 4562753-4562872

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:M88.6b.1 4562738 4566276 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon86179   135   III: 4562738-4562872 Caenorhabditis elegans
Exon86180   59   III: 4562941-4562999 Caenorhabditis elegans
Exon86181   124   III: 4563056-4563179 Caenorhabditis elegans
Exon86182   344   III: 4563282-4563625 Caenorhabditis elegans
Exon86183   221   III: 4563677-4563897 Caenorhabditis elegans
Exon86184   213   III: 4564234-4564446 Caenorhabditis elegans
Exon86187   152   III: 4564495-4564646 Caenorhabditis elegans
Exon86189   130   III: 4564696-4564825 Caenorhabditis elegans
Exon86191   269   III: 4565401-4565669 Caenorhabditis elegans
Exon86194   550   III: 4565727-4566276 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:M88.6b.1 4562738 4566276 1

1 Sequence

Length
2197

1 Sequence Ontology Term

Identifier Name Description
transcript