WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C38D4.3.1 Sequence Name  C38D4.3.1
Length (nt)  5463   Chromosome Location  III: 4786080-4792391
Chromosome . Primary Identifier  III Chromosome Location . Start  4786080
Chromosome Location . End  4792391 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C38D4.3.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003210 mel-28 C38D4.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C38D4.3 C38D4.3 5355   III: 4786081-4786171

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C38D4.3.1 4786080 4792391 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

18 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon86828   92   III: 4786080-4786171 Caenorhabditis elegans
Exon86829   138   III: 4786216-4786353 Caenorhabditis elegans
Exon86830   249   III: 4786412-4786660 Caenorhabditis elegans
Exon86831   108   III: 4786707-4786814 Caenorhabditis elegans
Exon86832   917   III: 4786859-4787775 Caenorhabditis elegans
Exon86833   120   III: 4787824-4787943 Caenorhabditis elegans
Exon86834   485   III: 4787987-4788471 Caenorhabditis elegans
Exon86835   515   III: 4788525-4789039 Caenorhabditis elegans
Exon86836   344   III: 4789090-4789433 Caenorhabditis elegans
Exon86837   1089   III: 4789484-4790572 Caenorhabditis elegans
Exon86838   93   III: 4790628-4790720 Caenorhabditis elegans
Exon86839   93   III: 4790771-4790863 Caenorhabditis elegans
Exon86840   93   III: 4790909-4791001 Caenorhabditis elegans
Exon86841   303   III: 4791048-4791350 Caenorhabditis elegans
Exon86842   312   III: 4791398-4791709 Caenorhabditis elegans
Exon86843   228   III: 4791786-4792013 Caenorhabditis elegans
Exon86844   138   III: 4792059-4792196 Caenorhabditis elegans
Exon86845   146   III: 4792246-4792391 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C38D4.3.1 4786080 4792391 1

1 Sequence

Length
5463

1 Sequence Ontology Term

Identifier Name Description
transcript