WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C38D4.5b.1 Sequence Name  C38D4.5b.1
Length (nt)  2918   Chromosome Location  III: 4796841-4802907
Chromosome . Primary Identifier  III Chromosome Location . Start  4796841
Chromosome Location . End  4802907 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C38D4.5b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008006 tag-325 C38D4.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C38D4.5b C38D4.5b 2517   III: 4796911-4797006

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C38D4.5b.1 4796841 4802907 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon86848   166   III: 4796841-4797006 Caenorhabditis elegans
Exon86850   149   III: 4797059-4797207 Caenorhabditis elegans
Exon86852   169   III: 4797575-4797743 Caenorhabditis elegans
Exon86854   419   III: 4797816-4798234 Caenorhabditis elegans
Exon86856   475   III: 4798631-4799105 Caenorhabditis elegans
Exon86858   216   III: 4799570-4799785 Caenorhabditis elegans
Exon86860   110   III: 4800555-4800664 Caenorhabditis elegans
Exon86863   179   III: 4800749-4800927 Caenorhabditis elegans
Exon86866   127   III: 4801123-4801249 Caenorhabditis elegans
Exon86869   182   III: 4801729-4801910 Caenorhabditis elegans
Exon86872   254   III: 4801964-4802217 Caenorhabditis elegans
Exon86876   472   III: 4802436-4802907 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C38D4.5b.1 4796841 4802907 1

1 Sequence

Length
2918

1 Sequence Ontology Term

Identifier Name Description
transcript