WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C26E6.9c.1 Sequence Name  C26E6.9c.1
Length (nt)  5104   Chromosome Location  III: 4922431-4930131
Chromosome . Primary Identifier  III Chromosome Location . Start  4922431
Chromosome Location . End  4930131 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C26E6.9c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004782 set-2 C26E6.9 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C26E6.9c C26E6.9c 4533   III: 4923002-4923157

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C26E6.9c.1 4922431 4930131 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon87254   727   III: 4922431-4923157 Caenorhabditis elegans
Exon87258   165   III: 4923211-4923375 Caenorhabditis elegans
Exon87261   111   III: 4923425-4923535 Caenorhabditis elegans
Exon87264   312   III: 4923583-4923894 Caenorhabditis elegans
Exon87267   228   III: 4923942-4924169 Caenorhabditis elegans
Exon87270   1008   III: 4924233-4925240 Caenorhabditis elegans
Exon87273   60   III: 4925687-4925746 Caenorhabditis elegans
Exon87276   249   III: 4926497-4926745 Caenorhabditis elegans
Exon87278   804   III: 4926800-4927603 Caenorhabditis elegans
Exon87280   389   III: 4927689-4928077 Caenorhabditis elegans
Exon87282   189   III: 4928673-4928861 Caenorhabditis elegans
Exon87284   249   III: 4928933-4929181 Caenorhabditis elegans
Exon87286   173   III: 4929359-4929531 Caenorhabditis elegans
Exon87288   242   III: 4929582-4929823 Caenorhabditis elegans
Exon87290   138   III: 4929875-4930012 Caenorhabditis elegans
Exon87291   60   III: 4930072-4930131 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C26E6.9c.1 4922431 4930131 -1

1 Sequence

Length
5104

1 Sequence Ontology Term

Identifier Name Description
transcript