WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C27F2.5.2 Sequence Name  C27F2.5.2
Length (nt)  1417   Chromosome Location  III: 4960338-4962493
Chromosome . Primary Identifier  III Chromosome Location . Start  4960338
Chromosome Location . End  4962493 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C27F2.5.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016167 vps-22 C27F2.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C27F2.5 C27F2.5 810   III: 4960612-4960804

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C27F2.5.2 4960338 4962493 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon87432   467   III: 4960338-4960804 Caenorhabditis elegans
Exon87435   189   III: 4960868-4961056 Caenorhabditis elegans
Exon87437   107   III: 4961099-4961205 Caenorhabditis elegans
Exon87439   74   III: 4961256-4961329 Caenorhabditis elegans
Exon87441   107   III: 4961378-4961484 Caenorhabditis elegans
Exon87443   77   III: 4961533-4961609 Caenorhabditis elegans
Exon87445   64   III: 4961652-4961715 Caenorhabditis elegans
Exon87447   70   III: 4962039-4962108 Caenorhabditis elegans
Exon87448   219   III: 4962162-4962380 Caenorhabditis elegans
Exon87450   43   III: 4962451-4962493 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C27F2.5.2 4960338 4962493 -1

1 Sequence

Length
1417

1 Sequence Ontology Term

Identifier Name Description
transcript