WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C27F2.8.1 Sequence Name  C27F2.8.1
Length (nt)  5647   Chromosome Location  III: 4991439-4998161
Chromosome . Primary Identifier  III Chromosome Location . Start  4991439
Chromosome Location . End  4998161 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C27F2.8.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016170 tmem-131 C27F2.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C27F2.8 C27F2.8 5496   III: 4991562-4991719

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C27F2.8.1 4991439 4998161 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon87542   281   III: 4991439-4991719 Caenorhabditis elegans
Exon87543   298   III: 4991789-4992086 Caenorhabditis elegans
Exon87544   150   III: 4992133-4992282 Caenorhabditis elegans
Exon87545   1351   III: 4992332-4993682 Caenorhabditis elegans
Exon87546   189   III: 4993729-4993917 Caenorhabditis elegans
Exon87547   190   III: 4993977-4994166 Caenorhabditis elegans
Exon87548   251   III: 4994216-4994466 Caenorhabditis elegans
Exon87549   749   III: 4994510-4995258 Caenorhabditis elegans
Exon87550   378   III: 4995303-4995680 Caenorhabditis elegans
Exon87551   246   III: 4995730-4995975 Caenorhabditis elegans
Exon87552   783   III: 4996065-4996847 Caenorhabditis elegans
Exon87553   246   III: 4997120-4997365 Caenorhabditis elegans
Exon87554   121   III: 4997412-4997532 Caenorhabditis elegans
Exon87555   290   III: 4997704-4997993 Caenorhabditis elegans
Exon87556   124   III: 4998038-4998161 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C27F2.8.1 4991439 4998161 -1

1 Sequence

Length
5647

1 Sequence Ontology Term

Identifier Name Description
transcript