WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R144.2a.2 Sequence Name  R144.2a.2
Length (nt)  3084   Chromosome Location  III: 5024915-5029825
Chromosome . Primary Identifier  III Chromosome Location . Start  5024915
Chromosome Location . End  5029825 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R144.2a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020092 pcf-11 R144.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R144.2a R144.2a 2472   III: 5025408-5025698

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R144.2a.2 5024915 5029825 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon87655   66   III: 5024915-5024980 Caenorhabditis elegans
Exon87657   355   III: 5025344-5025698 Caenorhabditis elegans
Exon87661   99   III: 5026383-5026481 Caenorhabditis elegans
Exon87665   222   III: 5026563-5026784 Caenorhabditis elegans
Exon87669   62   III: 5027051-5027112 Caenorhabditis elegans
Exon87671   228   III: 5027355-5027582 Caenorhabditis elegans
Exon87674   578   III: 5027628-5028205 Caenorhabditis elegans
Exon87677   320   III: 5028254-5028573 Caenorhabditis elegans
Exon87680   573   III: 5028623-5029195 Caenorhabditis elegans
Exon87684   581   III: 5029245-5029825 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R144.2a.2 5024915 5029825 1

1 Sequence

Length
3084

1 Sequence Ontology Term

Identifier Name Description
transcript