WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F54D8.6.1 Sequence Name  F54D8.6.1
Length (nt)  2597   Chromosome Location  III: 5102985-5107020
Chromosome . Primary Identifier  III Chromosome Location . Start  5102985
Chromosome Location . End  5107020 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F54D8.6.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018802 F54D8.6 F54D8.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54D8.6 F54D8.6 2391   III: 5102991-5103526

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F54D8.6.1 5102985 5107020 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon87841   542   III: 5102985-5103526 Caenorhabditis elegans
Exon87842   146   III: 5103576-5103721 Caenorhabditis elegans
Exon87843   101   III: 5104160-5104260 Caenorhabditis elegans
Exon87844   92   III: 5104312-5104403 Caenorhabditis elegans
Exon87845   51   III: 5104456-5104506 Caenorhabditis elegans
Exon87846   54   III: 5104552-5104605 Caenorhabditis elegans
Exon87847   41   III: 5104655-5104695 Caenorhabditis elegans
Exon87848   134   III: 5104750-5104883 Caenorhabditis elegans
Exon87849   754   III: 5105102-5105855 Caenorhabditis elegans
Exon87850   115   III: 5105942-5106056 Caenorhabditis elegans
Exon87851   111   III: 5106332-5106442 Caenorhabditis elegans
Exon87852   99   III: 5106498-5106596 Caenorhabditis elegans
Exon87853   357   III: 5106664-5107020 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F54D8.6.1 5102985 5107020 1

1 Sequence

Length
2597

1 Sequence Ontology Term

Identifier Name Description
transcript