WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:K10D2.1a.1 Sequence Name  K10D2.1a.1
Length (nt)  3093   Chromosome Location  III: 5191124-5196088
Chromosome . Primary Identifier  III Chromosome Location . Start  5191124
Chromosome Location . End  5196088 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K10D2.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019627 hira-1 K10D2.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K10D2.1a K10D2.1a 2808   III: 5191131-5191176

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:K10D2.1a.1 5191124 5196088 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon88033   53   III: 5191124-5191176 Caenorhabditis elegans
Exon88035   68   III: 5191222-5191289 Caenorhabditis elegans
Exon88037   109   III: 5191339-5191447 Caenorhabditis elegans
Exon88039   87   III: 5191497-5191583 Caenorhabditis elegans
Exon88041   350   III: 5191630-5191979 Caenorhabditis elegans
Exon88043   282   III: 5192051-5192332 Caenorhabditis elegans
Exon88045   162   III: 5192379-5192540 Caenorhabditis elegans
Exon88047   165   III: 5192858-5193022 Caenorhabditis elegans
Exon88049   737   III: 5193924-5194660 Caenorhabditis elegans
Exon88052   611   III: 5194961-5195571 Caenorhabditis elegans
Exon88056   469   III: 5195620-5196088 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:K10D2.1a.1 5191124 5196088 1

1 Sequence

Length
3093

1 Sequence Ontology Term

Identifier Name Description
transcript