WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C34E10.3.1 Sequence Name  C34E10.3.1
Length (nt)  2958   Chromosome Location  III: 5254438-5258886
Chromosome . Primary Identifier  III Chromosome Location . Start  5254438
Chromosome Location . End  5258886 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C34E10.3.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001660 gop-1 C34E10.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C34E10.3 C34E10.3 2679   III: 5254470-5254669

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C34E10.3.1 5254438 5258886 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon88221   232   III: 5254438-5254669 Caenorhabditis elegans
Exon88222   131   III: 5254718-5254848 Caenorhabditis elegans
Exon88223   299   III: 5254894-5255192 Caenorhabditis elegans
Exon88224   193   III: 5255244-5255436 Caenorhabditis elegans
Exon88225   116   III: 5255484-5255599 Caenorhabditis elegans
Exon88226   158   III: 5255650-5255807 Caenorhabditis elegans
Exon88227   104   III: 5255856-5255959 Caenorhabditis elegans
Exon88228   206   III: 5256553-5256758 Caenorhabditis elegans
Exon88229   60   III: 5256858-5256917 Caenorhabditis elegans
Exon88230   216   III: 5257005-5257220 Caenorhabditis elegans
Exon88231   126   III: 5257280-5257405 Caenorhabditis elegans
Exon88232   123   III: 5257453-5257575 Caenorhabditis elegans
Exon88233   130   III: 5257623-5257752 Caenorhabditis elegans
Exon88234   251   III: 5257808-5258058 Caenorhabditis elegans
Exon88235   81   III: 5258108-5258188 Caenorhabditis elegans
Exon88236   532   III: 5258355-5258886 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C34E10.3.1 5254438 5258886 1

1 Sequence

Length
2958

1 Sequence Ontology Term

Identifier Name Description
transcript