WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C34E10.8.1 Sequence Name  C34E10.8.1
Length (nt)  3272   Chromosome Location  III: 5249075-5254187
Chromosome . Primary Identifier  III Chromosome Location . Start  5249075
Chromosome Location . End  5254187 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C34E10.8.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016409 sumv-1 C34E10.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C34E10.8 C34E10.8 3075   III: 5249271-5249347

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C34E10.8.1 5249075 5254187 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon88239   273   III: 5249075-5249347 Caenorhabditis elegans
Exon88240   103   III: 5249425-5249527 Caenorhabditis elegans
Exon88241   164   III: 5249581-5249744 Caenorhabditis elegans
Exon88242   545   III: 5249820-5250364 Caenorhabditis elegans
Exon88243   255   III: 5250443-5250697 Caenorhabditis elegans
Exon88244   211   III: 5250799-5251009 Caenorhabditis elegans
Exon88245   163   III: 5251057-5251219 Caenorhabditis elegans
Exon88246   188   III: 5251608-5251795 Caenorhabditis elegans
Exon88247   53   III: 5251844-5251896 Caenorhabditis elegans
Exon88248   245   III: 5251942-5252186 Caenorhabditis elegans
Exon88249   69   III: 5252714-5252782 Caenorhabditis elegans
Exon88250   92   III: 5252838-5252929 Caenorhabditis elegans
Exon88251   99   III: 5252979-5253077 Caenorhabditis elegans
Exon88252   172   III: 5253125-5253296 Caenorhabditis elegans
Exon88253   80   III: 5253344-5253423 Caenorhabditis elegans
Exon88254   149   III: 5253473-5253621 Caenorhabditis elegans
Exon88255   93   III: 5253677-5253769 Caenorhabditis elegans
Exon88256   176   III: 5253814-5253989 Caenorhabditis elegans
Exon88257   142   III: 5254046-5254187 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C34E10.8.1 5249075 5254187 -1

1 Sequence

Length
3272

1 Sequence Ontology Term

Identifier Name Description
transcript