WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F52C9.8b.1 Sequence Name  F52C9.8b.1
Length (nt)  5338   Chromosome Location  III: 5311240-5321745
Chromosome . Primary Identifier  III Chromosome Location . Start  5311240
Chromosome Location . End  5321745 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F52C9.8b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004095 pqe-1 F52C9.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F52C9.8b F52C9.8b 4944   III: 5311260-5311329

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F52C9.8b.1 5311240 5321745 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon88393   90   III: 5311240-5311329 Caenorhabditis elegans
Exon88404   77   III: 5311771-5311847 Caenorhabditis elegans
Exon88411   54   III: 5311952-5312005 Caenorhabditis elegans
Exon88418   84   III: 5312054-5312137 Caenorhabditis elegans
Exon88425   93   III: 5312452-5312544 Caenorhabditis elegans
Exon88430   1504   III: 5312614-5314117 Caenorhabditis elegans
Exon88431   1334   III: 5314169-5315502 Caenorhabditis elegans
Exon88436   57   III: 5315713-5315769 Caenorhabditis elegans
Exon88442   231   III: 5315815-5316045 Caenorhabditis elegans
Exon88447   177   III: 5316095-5316271 Caenorhabditis elegans
Exon88454   214   III: 5316699-5316912 Caenorhabditis elegans
Exon88462   731   III: 5319927-5320657 Caenorhabditis elegans
Exon88473   692   III: 5321054-5321745 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F52C9.8b.1 5311240 5321745 1

1 Sequence

Length
5338

1 Sequence Ontology Term

Identifier Name Description
transcript