WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F52C9.8a.1 Sequence Name  F52C9.8a.1
Length (nt)  5531   Chromosome Location  III: 5311246-5321734
Chromosome . Primary Identifier  III Chromosome Location . Start  5311246
Chromosome Location . End  5321734 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F52C9.8a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004095 pqe-1 F52C9.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F52C9.8a F52C9.8a 3246   III: 5311260-5311329

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F52C9.8a.1 5311246 5321734 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon88404   84   III: 5311246-5311329 Caenorhabditis elegans
Exon88407   77   III: 5311771-5311847 Caenorhabditis elegans
Exon88414   54   III: 5311952-5312005 Caenorhabditis elegans
Exon88421   84   III: 5312054-5312137 Caenorhabditis elegans
Exon88428   93   III: 5312452-5312544 Caenorhabditis elegans
Exon88433   1504   III: 5312614-5314117 Caenorhabditis elegans
Exon88439   1601   III: 5314169-5315769 Caenorhabditis elegans
Exon88448   231   III: 5315815-5316045 Caenorhabditis elegans
Exon88451   177   III: 5316095-5316271 Caenorhabditis elegans
Exon88457   214   III: 5316699-5316912 Caenorhabditis elegans
Exon88465   731   III: 5319927-5320657 Caenorhabditis elegans
Exon88475   681   III: 5321054-5321734 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F52C9.8a.1 5311246 5321734 1

1 Sequence

Length
5531

1 Sequence Ontology Term

Identifier Name Description
transcript