WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F52C9.1.1 Sequence Name  F52C9.1.1
Length (nt)  4234   Chromosome Location  III: 5326623-5333620
Chromosome . Primary Identifier  III Chromosome Location . Start  5326623
Chromosome Location . End  5333620 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F52C9.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018672 sorf-2 F52C9.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F52C9.1 F52C9.1 4149   III: 5326631-5326806

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F52C9.1.1 5326623 5333620 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon88518   184   III: 5326623-5326806 Caenorhabditis elegans
Exon88519   726   III: 5327221-5327946 Caenorhabditis elegans
Exon88520   218   III: 5328218-5328435 Caenorhabditis elegans
Exon88521   149   III: 5328525-5328673 Caenorhabditis elegans
Exon88522   135   III: 5328774-5328908 Caenorhabditis elegans
Exon88523   138   III: 5329297-5329434 Caenorhabditis elegans
Exon88524   334   III: 5329481-5329814 Caenorhabditis elegans
Exon88525   503   III: 5329859-5330361 Caenorhabditis elegans
Exon88526   351   III: 5330528-5330878 Caenorhabditis elegans
Exon88527   159   III: 5331099-5331257 Caenorhabditis elegans
Exon88528   350   III: 5331528-5331877 Caenorhabditis elegans
Exon88529   123   III: 5331934-5332056 Caenorhabditis elegans
Exon88530   362   III: 5332102-5332463 Caenorhabditis elegans
Exon88531   107   III: 5332587-5332693 Caenorhabditis elegans
Exon88532   170   III: 5333180-5333349 Caenorhabditis elegans
Exon88533   225   III: 5333396-5333620 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F52C9.1.1 5326623 5333620 1

1 Sequence

Length
4234

1 Sequence Ontology Term

Identifier Name Description
transcript