WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:W03A5.1.1 Sequence Name  W03A5.1.1
Length (nt)  2815   Chromosome Location  III: 5407888-5413214
Chromosome . Primary Identifier  III Chromosome Location . Start  5407888
Chromosome Location . End  5413214 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
W03A5.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020966 W03A5.1 W03A5.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:W03A5.1 W03A5.1 2412   III: 5408131-5408157

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:W03A5.1.1 5407888 5413214 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon88806   270   III: 5407888-5408157 Caenorhabditis elegans
Exon88807   440   III: 5408801-5409240 Caenorhabditis elegans
Exon88808   149   III: 5409371-5409519 Caenorhabditis elegans
Exon88809   240   III: 5409563-5409802 Caenorhabditis elegans
Exon88810   137   III: 5411011-5411147 Caenorhabditis elegans
Exon88811   486   III: 5411202-5411687 Caenorhabditis elegans
Exon88812   168   III: 5411781-5411948 Caenorhabditis elegans
Exon88813   272   III: 5412055-5412326 Caenorhabditis elegans
Exon88814   345   III: 5412418-5412762 Caenorhabditis elegans
Exon88815   308   III: 5412907-5413214 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:W03A5.1.1 5407888 5413214 1

1 Sequence

Length
2815

1 Sequence Ontology Term

Identifier Name Description
transcript