WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:W03A5.6a.1 Sequence Name  W03A5.6a.1
Length (nt)  2440   Chromosome Location  III: 5431379-5440640
Chromosome . Primary Identifier  III Chromosome Location . Start  5431379
Chromosome Location . End  5440640 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
W03A5.6a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020970 dlgr-1 W03A5.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:W03A5.6a W03A5.6a 1833   III: 5431978-5432088

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:W03A5.6a.1 5431379 5440640 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon88868   710   III: 5431379-5432088 Caenorhabditis elegans
Exon88871   273   III: 5432428-5432700 Caenorhabditis elegans
Exon88874   402   III: 5433185-5433586 Caenorhabditis elegans
Exon88878   205   III: 5434045-5434249 Caenorhabditis elegans
Exon88880   111   III: 5438845-5438955 Caenorhabditis elegans
Exon88882   78   III: 5439288-5439365 Caenorhabditis elegans
Exon88884   170   III: 5439419-5439588 Caenorhabditis elegans
Exon88886   107   III: 5439654-5439760 Caenorhabditis elegans
Exon88888   61   III: 5439868-5439928 Caenorhabditis elegans
Exon88890   98   III: 5440112-5440209 Caenorhabditis elegans
Exon88892   104   III: 5440257-5440360 Caenorhabditis elegans
Exon88895   121   III: 5440520-5440640 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:W03A5.6a.1 5431379 5440640 -1

1 Sequence

Length
2440

1 Sequence Ontology Term

Identifier Name Description
transcript