WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:F48E8.7a Sequence Name  F48E8.7a
Length (nt)  1266   Chromosome Location  III: 5446636-5446831
Chromosome . Primary Identifier  III Chromosome Location . Start  5446636
Chromosome Location . End  5446831
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F48E8.7a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE28404 SKPT-1, isoform a 47.5 421 Caenorhabditis elegans
 

Other

4 RNAi

WormBase ID
WBRNAi00047756
WBRNAi00015255
WBRNAi00005292
WBRNAi00032491

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:F48E8.7a 5446636 5446831 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018613 skpt-1 F48E8.7 Caenorhabditis elegans

7 Locations


Feature . Primary Identifier
Start End Strand
CDS:F48E8.7a 5446636 5446831 -1
CDS:F48E8.7a 5446882 5447044 -1
CDS:F48E8.7a 5447095 5447228 -1
CDS:F48E8.7a 5447338 5447624 -1
CDS:F48E8.7a 5447668 5447992 -1
CDS:F48E8.7a 5448040 5448121 -1
CDS:F48E8.7a 5448165 5448243 -1

1 Sequence

Length
1266

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F48E8.7a.1 F48E8.7a.1 1425   III: 5446513-5448279