WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:D1044.8.1 Sequence Name  D1044.8.1
Length (nt)  3155   Chromosome Location  III: 5512912-5517523
Chromosome . Primary Identifier  III Chromosome Location . Start  5512912
Chromosome Location . End  5517523 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
D1044.8.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00017033 nekl-4 D1044.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:D1044.8 D1044.8 2946   III: 5513121-5513203

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:D1044.8.1 5512912 5517523 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon89030   292   III: 5512912-5513203 Caenorhabditis elegans
Exon89031   507   III: 5513249-5513755 Caenorhabditis elegans
Exon89032   405   III: 5513970-5514374 Caenorhabditis elegans
Exon89033   232   III: 5514521-5514752 Caenorhabditis elegans
Exon89034   438   III: 5514894-5515331 Caenorhabditis elegans
Exon89035   595   III: 5515447-5516041 Caenorhabditis elegans
Exon89038   113   III: 5516349-5516461 Caenorhabditis elegans
Exon89039   125   III: 5516508-5516632 Caenorhabditis elegans
Exon89040   260   III: 5516679-5516938 Caenorhabditis elegans
Exon89041   84   III: 5517097-5517180 Caenorhabditis elegans
Exon89042   104   III: 5517420-5517523 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:D1044.8.1 5512912 5517523 -1

1 Sequence

Length
3155

1 Sequence Ontology Term

Identifier Name Description
transcript