WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:D1044.3.1 Sequence Name  D1044.3.1
Length (nt)  2110   Chromosome Location  III: 5509170-5512602
Chromosome . Primary Identifier  III Chromosome Location . Start  5509170
Chromosome Location . End  5512602 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
D1044.3.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004114 pqn-25 D1044.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:D1044.3 D1044.3 2019   III: 5509261-5509578

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:D1044.3.1 5509170 5512602 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon89057   409   III: 5509170-5509578 Caenorhabditis elegans
Exon89058   177   III: 5509619-5509795 Caenorhabditis elegans
Exon89059   177   III: 5510058-5510234 Caenorhabditis elegans
Exon89060   183   III: 5510284-5510466 Caenorhabditis elegans
Exon89061   376   III: 5510518-5510893 Caenorhabditis elegans
Exon89062   340   III: 5511188-5511527 Caenorhabditis elegans
Exon89063   126   III: 5511574-5511699 Caenorhabditis elegans
Exon89064   121   III: 5511859-5511979 Caenorhabditis elegans
Exon89065   65   III: 5512028-5512092 Caenorhabditis elegans
Exon89066   136   III: 5512467-5512602 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:D1044.3.1 5509170 5512602 -1

1 Sequence

Length
2110

1 Sequence Ontology Term

Identifier Name Description
transcript