WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:D1044.2c.1 Sequence Name  D1044.2c.1
Length (nt)  4021   Chromosome Location  III: 5526104-5535499
Chromosome . Primary Identifier  III Chromosome Location . Start  5526104
Chromosome Location . End  5535499 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
D1044.2c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00017028 dex-1 D1044.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:D1044.2c D1044.2c 3414   III: 5526104-5526145

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:D1044.2c.1 5526104 5535499 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon89083   42   III: 5526104-5526145 Caenorhabditis elegans
Exon89085   210   III: 5527747-5527956 Caenorhabditis elegans
Exon89089   147   III: 5528443-5528589 Caenorhabditis elegans
Exon89092   148   III: 5528636-5528783 Caenorhabditis elegans
Exon89095   131   III: 5528829-5528959 Caenorhabditis elegans
Exon89098   96   III: 5529477-5529572 Caenorhabditis elegans
Exon89101   181   III: 5530055-5530235 Caenorhabditis elegans
Exon89104   270   III: 5530310-5530579 Caenorhabditis elegans
Exon89107   509   III: 5530754-5531262 Caenorhabditis elegans
Exon89110   720   III: 5531597-5532316 Caenorhabditis elegans
Exon89113   174   III: 5532515-5532688 Caenorhabditis elegans
Exon89116   379   III: 5532745-5533123 Caenorhabditis elegans
Exon89119   245   III: 5533524-5533768 Caenorhabditis elegans
Exon89120   135   III: 5533877-5534011 Caenorhabditis elegans
Exon89121   634   III: 5534866-5535499 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:D1044.2c.1 5526104 5535499 1

1 Sequence

Length
4021

1 Sequence Ontology Term

Identifier Name Description
transcript