WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F56D2.1a.1 Sequence Name  F56D2.1a.1
Length (nt)  1709   Chromosome Location  III: 5592135-5594401
Chromosome . Primary Identifier  III Chromosome Location . Start  5592135
Chromosome Location . End  5594401 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F56D2.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018963 ucr-1 F56D2.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F56D2.1a F56D2.1a 1416   III: 5592158-5592211

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F56D2.1a.1 5592135 5594401 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon89234   77   III: 5592135-5592211 Caenorhabditis elegans
Exon89236   126   III: 5592354-5592479 Caenorhabditis elegans
Exon89238   217   III: 5592529-5592745 Caenorhabditis elegans
Exon89240   200   III: 5592795-5592994 Caenorhabditis elegans
Exon89244   243   III: 5593039-5593281 Caenorhabditis elegans
Exon89248   58   III: 5593331-5593388 Caenorhabditis elegans
Exon89254   112   III: 5593446-5593557 Caenorhabditis elegans
Exon89256   211   III: 5593610-5593820 Caenorhabditis elegans
Exon89260   130   III: 5593871-5594000 Caenorhabditis elegans
Exon89267   335   III: 5594067-5594401 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F56D2.1a.1 5592135 5594401 1

1 Sequence

Length
1709

1 Sequence Ontology Term

Identifier Name Description
transcript