WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F56D2.1c.1 Sequence Name  F56D2.1c.1
Length (nt)  1616   Chromosome Location  III: 5592158-5594325
Chromosome . Primary Identifier  III Chromosome Location . Start  5592158
Chromosome Location . End  5594325 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F56D2.1c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018963 ucr-1 F56D2.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F56D2.1c F56D2.1c 1422   III: 5592158-5592211

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F56D2.1c.1 5592158 5594325 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon89235   54   III: 5592158-5592211 Caenorhabditis elegans
Exon89237   126   III: 5592354-5592479 Caenorhabditis elegans
Exon89239   217   III: 5592529-5592745 Caenorhabditis elegans
Exon89241   200   III: 5592795-5592994 Caenorhabditis elegans
Exon89246   243   III: 5593039-5593281 Caenorhabditis elegans
Exon89250   58   III: 5593331-5593388 Caenorhabditis elegans
Exon89252   118   III: 5593440-5593557 Caenorhabditis elegans
Exon89258   211   III: 5593610-5593820 Caenorhabditis elegans
Exon89262   130   III: 5593871-5594000 Caenorhabditis elegans
Exon89266   259   III: 5594067-5594325 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F56D2.1c.1 5592158 5594325 1

1 Sequence

Length
1616

1 Sequence Ontology Term

Identifier Name Description
transcript