WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C05D2.1e.1 Sequence Name  C05D2.1e.1
Length (nt)  2658   Chromosome Location  III: 5625135-5632322
Chromosome . Primary Identifier  III Chromosome Location . Start  5625135
Chromosome Location . End  5632322 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C05D2.1e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000900 daf-4 C05D2.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C05D2.1e C05D2.1e 2172   III: 5625142-5625282

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C05D2.1e.1 5625135 5632322 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon89352   148   III: 5625135-5625282 Caenorhabditis elegans
Exon89359   132   III: 5625363-5625494 Caenorhabditis elegans
Exon89365   123   III: 5625863-5625985 Caenorhabditis elegans
Exon89371   108   III: 5626607-5626714 Caenorhabditis elegans
Exon89377   109   III: 5626764-5626872 Caenorhabditis elegans
Exon89391   146   III: 5628669-5628814 Caenorhabditis elegans
Exon89398   108   III: 5628862-5628969 Caenorhabditis elegans
Exon89404   386   III: 5629461-5629846 Caenorhabditis elegans
Exon89411   701   III: 5630458-5631158 Caenorhabditis elegans
Exon89416   697   III: 5631626-5632322 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C05D2.1e.1 5625135 5632322 1

1 Sequence

Length
2658

1 Sequence Ontology Term

Identifier Name Description
transcript