WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C05D2.1c.1 Sequence Name  C05D2.1c.1
Length (nt)  2648   Chromosome Location  III: 5625136-5632307
Chromosome . Primary Identifier  III Chromosome Location . Start  5625136
Chromosome Location . End  5632307 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C05D2.1c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000900 daf-4 C05D2.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C05D2.1c C05D2.1c 1779   III: 5626667-5626714

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C05D2.1c.1 5625136 5632307 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon89353   147   III: 5625136-5625282 Caenorhabditis elegans
Exon89360   75   III: 5625420-5625494 Caenorhabditis elegans
Exon89362   123   III: 5625863-5625985 Caenorhabditis elegans
Exon89368   108   III: 5626607-5626714 Caenorhabditis elegans
Exon89373   109   III: 5626764-5626872 Caenorhabditis elegans
Exon89380   63   III: 5628496-5628558 Caenorhabditis elegans
Exon89387   146   III: 5628669-5628814 Caenorhabditis elegans
Exon89394   108   III: 5628862-5628969 Caenorhabditis elegans
Exon89401   386   III: 5629461-5629846 Caenorhabditis elegans
Exon89408   701   III: 5630458-5631158 Caenorhabditis elegans
Exon89414   682   III: 5631626-5632307 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C05D2.1c.1 5625136 5632307 1

1 Sequence

Length
2648

1 Sequence Ontology Term

Identifier Name Description
transcript