WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C05D2.1a.1 Sequence Name  C05D2.1a.1
Length (nt)  2714   Chromosome Location  III: 5625142-5632322
Chromosome . Primary Identifier  III Chromosome Location . Start  5625142
Chromosome Location . End  5632322 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C05D2.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000900 daf-4 C05D2.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C05D2.1a C05D2.1a 2235   III: 5625142-5625282

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C05D2.1a.1 5625142 5632322 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon89355   141   III: 5625142-5625282 Caenorhabditis elegans
Exon89357   132   III: 5625363-5625494 Caenorhabditis elegans
Exon89361   123   III: 5625863-5625985 Caenorhabditis elegans
Exon89367   108   III: 5626607-5626714 Caenorhabditis elegans
Exon89372   109   III: 5626764-5626872 Caenorhabditis elegans
Exon89379   63   III: 5628496-5628558 Caenorhabditis elegans
Exon89385   146   III: 5628669-5628814 Caenorhabditis elegans
Exon89392   108   III: 5628862-5628969 Caenorhabditis elegans
Exon89399   386   III: 5629461-5629846 Caenorhabditis elegans
Exon89406   701   III: 5630458-5631158 Caenorhabditis elegans
Exon89415   697   III: 5631626-5632322 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C05D2.1a.1 5625142 5632322 1

1 Sequence

Length
2714

1 Sequence Ontology Term

Identifier Name Description
transcript