WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C05H8.1b.1 Sequence Name  C05H8.1b.1
Length (nt)  1916   Chromosome Location  III: 5635479-5654559
Chromosome . Primary Identifier  III Chromosome Location . Start  5635479
Chromosome Location . End  5654559 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C05H8.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000518 ckk-1 C05H8.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C05H8.1b C05H8.1b 1626   III: 5635489-5635574

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C05H8.1b.1 5635479 5654559 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon89448   96   III: 5635479-5635574 Caenorhabditis elegans
Exon89449   205   III: 5645101-5645305 Caenorhabditis elegans
Exon89450   51   III: 5649347-5649397 Caenorhabditis elegans
Exon89452   72   III: 5651758-5651829 Caenorhabditis elegans
Exon89454   237   III: 5652109-5652345 Caenorhabditis elegans
Exon89456   148   III: 5652533-5652680 Caenorhabditis elegans
Exon89458   74   III: 5652871-5652944 Caenorhabditis elegans
Exon89460   183   III: 5653024-5653206 Caenorhabditis elegans
Exon89462   341   III: 5653266-5653606 Caenorhabditis elegans
Exon89464   126   III: 5653653-5653778 Caenorhabditis elegans
Exon89467   383   III: 5654177-5654559 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C05H8.1b.1 5635479 5654559 1

1 Sequence

Length
1916

1 Sequence Ontology Term

Identifier Name Description
transcript