WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F54E7.3b.1 Sequence Name  F54E7.3b.1
Length (nt)  4909   Chromosome Location  III: 5664233-5676795
Chromosome . Primary Identifier  III Chromosome Location . Start  5664233
Chromosome Location . End  5676795 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F54E7.3b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003918 par-3 F54E7.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54E7.3b F54E7.3b 4140   III: 5664372-5664539

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F54E7.3b.1 5664233 5676795 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon89483   71   III: 5664233-5664303 Caenorhabditis elegans
Exon89487   178   III: 5664362-5664539 Caenorhabditis elegans
Exon89494   90   III: 5664946-5665035 Caenorhabditis elegans
Exon89502   63   III: 5665089-5665151 Caenorhabditis elegans
Exon89518   108   III: 5668754-5668861 Caenorhabditis elegans
Exon89526   148   III: 5668940-5669087 Caenorhabditis elegans
Exon89543   984   III: 5669551-5670534 Caenorhabditis elegans
Exon89559   1116   III: 5670732-5671847 Caenorhabditis elegans
Exon89575   147   III: 5672221-5672367 Caenorhabditis elegans
Exon89587   223   III: 5672472-5672694 Caenorhabditis elegans
Exon89602   262   III: 5673119-5673380 Caenorhabditis elegans
Exon89623   176   III: 5674721-5674896 Caenorhabditis elegans
Exon89639   655   III: 5675248-5675902 Caenorhabditis elegans
Exon89655   126   III: 5676056-5676181 Caenorhabditis elegans
Exon89676   562   III: 5676234-5676795 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F54E7.3b.1 5664233 5676795 1

1 Sequence

Length
4909

1 Sequence Ontology Term

Identifier Name Description
transcript