WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F54E7.3d.1 Sequence Name  F54E7.3d.1
Length (nt)  4707   Chromosome Location  III: 5668541-5676738
Chromosome . Primary Identifier  III Chromosome Location . Start  5668541
Chromosome Location . End  5676738 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F54E7.3d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003918 par-3 F54E7.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54E7.3d F54E7.3d 4365   III: 5668541-5668732

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F54E7.3d.1 5668541 5676738 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon89479   192   III: 5668541-5668732 Caenorhabditis elegans
Exon89494   148   III: 5668940-5669087 Caenorhabditis elegans
Exon89511   984   III: 5669551-5670534 Caenorhabditis elegans
Exon89527   1116   III: 5670732-5671847 Caenorhabditis elegans
Exon89543   147   III: 5672221-5672367 Caenorhabditis elegans
Exon89555   223   III: 5672472-5672694 Caenorhabditis elegans
Exon89568   262   III: 5673119-5673380 Caenorhabditis elegans
Exon89581   173   III: 5674017-5674189 Caenorhabditis elegans
Exon89591   176   III: 5674721-5674896 Caenorhabditis elegans
Exon89607   655   III: 5675248-5675902 Caenorhabditis elegans
Exon89621   126   III: 5676056-5676181 Caenorhabditis elegans
Exon89637   505   III: 5676234-5676738 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F54E7.3d.1 5668541 5676738 1

1 Sequence

Length
4707

1 Sequence Ontology Term

Identifier Name Description
transcript