WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:B0336.11a.1 Sequence Name  B0336.11a.1
Length (nt)  1740   Chromosome Location  III: 5706717-5709324
Chromosome . Primary Identifier  III Chromosome Location . Start  5706717
Chromosome Location . End  5709324 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
B0336.11a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015148 hpo-28 B0336.11 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:B0336.11a B0336.11a 1704   III: 5706752-5707179

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:B0336.11a.1 5706717 5709324 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon89815   463   III: 5706717-5707179 Caenorhabditis elegans
Exon89816   200   III: 5707232-5707431 Caenorhabditis elegans
Exon89818   176   III: 5707477-5707652 Caenorhabditis elegans
Exon89820   159   III: 5707845-5708003 Caenorhabditis elegans
Exon89822   126   III: 5708279-5708404 Caenorhabditis elegans
Exon89823   111   III: 5708516-5708626 Caenorhabditis elegans
Exon89824   149   III: 5708672-5708820 Caenorhabditis elegans
Exon89825   84   III: 5708872-5708955 Caenorhabditis elegans
Exon89826   163   III: 5709008-5709170 Caenorhabditis elegans
Exon89827   109   III: 5709216-5709324 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:B0336.11a.1 5706717 5709324 -1

1 Sequence

Length
1740

1 Sequence Ontology Term

Identifier Name Description
transcript