WormMine: Gene WBGene00197661

• WormBase Gene ID: WBGene00197661
• Gene Name: R12B2.9
• Sequence Name: R12B2.9
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by cep-1; met-2; and fzo-1 based on RNA-seq studies. Is affected by silicon dioxide nanoparticle based on microarray studies.
• Biotype: SO:0001263
• Genetic Position: :±
• Length (nt): 150

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00197661

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:R12B2.9	R12B2.9	150	III: 5814520-5814669

Other

0 CDSs

0 RNAi Result

8 Allele

• gk964518
• gk964338
• gk964339
• WBVar00099470
• gk487532
• WBVar01263947
• gk467110
• WBVar01952184

1 Chromosome

• WormBase ID: III
• Organism: Caenorhabditis elegans
• Length (nt): 13783801

1 Chromosome Location

• Feature . Primary Identifier: WBGene00197661
• Start: 5814520
• End: 5814669
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrIII_5814670..5814759
• Length (nt): 90
• Chromosome Location: III: 5814670-5814759
• Organism: Caenorhabditis elegans

5 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly decreased expression in whole animal day 1 N2 adults comparing to in whole animal day 8 N2 adults.	DESeq2, FDR < 0.05, fold change > 2.	WBPaper00066978:Day1Adult_vs_Day8Adult_downregulated_neuron
	Transcripts that showed significantly increased expression in animals after 24 hour exposure to 100ug per ml silica nanoparticles (SiNPs).	The random variance model (RVM)t-test was applied toidentify differentially expressed mRNAs and miRNAsbetween the SiNPs-treated group and the control group. P-value <0.05 and fold change (FC) >1.5 were considered as the threshold screening between the SiNP-treated groupand the control group.	WBPaper00060100:SiNP_upregulated_mRNA
	Transcripts that showed significantly increased expression in zcIs13; twnEx320[Punc-119-ds-fzo-1] comparing to in zcIs13[Phsp-6-gfp] animals.	Fold change >= 1.5.	WBPaper00061409:neuronal-fzo-1(RNAi)_upregulated
	ncRNAs with significantly increased expression in cep-1(gk138) than in N2 under normal conditions, according to RNAseq.	ncRNAs with more than 2 fold difference in expression are considered differentially expressed	WBPaper00045380:cep-1(gk138)_upregulated_normal
	Transcripts that showed significantly increased expression in met-2(n4256) L1 animals comparing to in N2 control.	DeSeq2 (v.2.11.40.2), p < 0.05.	WBPaper00060886:met-2(n4256)_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00197661
• Start: 5814520
• End: 5814669
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 150

1 Sequence Ontology Term