WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R12B2.1a.1 Sequence Name  R12B2.1a.1
Length (nt)  1832   Chromosome Location  III: 5816275-5820197
Chromosome . Primary Identifier  III Chromosome Location . Start  5816275
Chromosome Location . End  5820197 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R12B2.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004858 sma-4 R12B2.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R12B2.1a R12B2.1a 1698   III: 5816277-5816348

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R12B2.1a.1 5816275 5820197 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon90131   74   III: 5816275-5816348 Caenorhabditis elegans
Exon90132   78   III: 5816549-5816626 Caenorhabditis elegans
Exon90134   315   III: 5816782-5817096 Caenorhabditis elegans
Exon90136   141   III: 5817672-5817812 Caenorhabditis elegans
Exon90138   105   III: 5818117-5818221 Caenorhabditis elegans
Exon90140   214   III: 5818267-5818480 Caenorhabditis elegans
Exon90142   161   III: 5818712-5818872 Caenorhabditis elegans
Exon90144   128   III: 5819005-5819132 Caenorhabditis elegans
Exon90147   166   III: 5819181-5819346 Caenorhabditis elegans
Exon90150   102   III: 5819392-5819493 Caenorhabditis elegans
Exon90153   123   III: 5819802-5819924 Caenorhabditis elegans
Exon90157   225   III: 5819973-5820197 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R12B2.1a.1 5816275 5820197 1

1 Sequence

Length
1832

1 Sequence Ontology Term

Identifier Name Description
transcript