WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R12B2.1a.2 Sequence Name  R12B2.1a.2
Length (nt)  1882   Chromosome Location  III: 5816232-5820204
Chromosome . Primary Identifier  III Chromosome Location . Start  5816232
Chromosome Location . End  5820204 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R12B2.1a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004858 sma-4 R12B2.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R12B2.1a R12B2.1a 1698   III: 5816277-5816348

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R12B2.1a.2 5816232 5820204 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon90160   117   III: 5816232-5816348 Caenorhabditis elegans
Exon90163   78   III: 5816549-5816626 Caenorhabditis elegans
Exon90165   315   III: 5816782-5817096 Caenorhabditis elegans
Exon90167   141   III: 5817672-5817812 Caenorhabditis elegans
Exon90169   105   III: 5818117-5818221 Caenorhabditis elegans
Exon90171   214   III: 5818267-5818480 Caenorhabditis elegans
Exon90173   161   III: 5818712-5818872 Caenorhabditis elegans
Exon90175   128   III: 5819005-5819132 Caenorhabditis elegans
Exon90178   166   III: 5819181-5819346 Caenorhabditis elegans
Exon90181   102   III: 5819392-5819493 Caenorhabditis elegans
Exon90184   123   III: 5819802-5819924 Caenorhabditis elegans
Exon90188   232   III: 5819973-5820204 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R12B2.1a.2 5816232 5820204 1

1 Sequence

Length
1882

1 Sequence Ontology Term

Identifier Name Description
transcript