WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C28H8.6a.1 Sequence Name  C28H8.6a.1
Length (nt)  1373   Chromosome Location  III: 5890273-5896011
Chromosome . Primary Identifier  III Chromosome Location . Start  5890273
Chromosome Location . End  5896011 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C28H8.6a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016197 pxl-1 C28H8.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C28H8.6a C28H8.6a 1242   III: 5890399-5890677

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C28H8.6a.1 5890273 5896011 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon90377   405   III: 5890273-5890677 Caenorhabditis elegans
Exon90379   135   III: 5891324-5891458 Caenorhabditis elegans
Exon90382   96   III: 5891507-5891602 Caenorhabditis elegans
Exon90385   174   III: 5891845-5892018 Caenorhabditis elegans
Exon90388   147   III: 5892278-5892424 Caenorhabditis elegans
Exon90391   52   III: 5894079-5894130 Caenorhabditis elegans
Exon90394   94   III: 5895246-5895339 Caenorhabditis elegans
Exon90395   89   III: 5895386-5895474 Caenorhabditis elegans
Exon90396   130   III: 5895550-5895679 Caenorhabditis elegans
Exon90398   51   III: 5895961-5896011 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C28H8.6a.1 5890273 5896011 -1

1 Sequence

Length
1373

1 Sequence Ontology Term

Identifier Name Description
transcript