WormMine: Gene WBGene00271775

• WormBase Gene ID: WBGene00271775
• Gene Name: EGAP1.5
• Sequence Name: EGAP1.5
• Organism: Caenorhabditis elegans
• Automated Description: Enriched in several structures, including GLR; distal tip cell; enteric muscle; head mesodermal cell; and uterine muscle based on single-cell RNA-seq studies. Is affected by hda-1; hda-2; and ilc-17.1 based on RNA-seq studies.
• Biotype: SO:0001217
• Genetic Position: :±
• Length (nt): 1068

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00271775

Genomics

2 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:EGAP1.5a.1	EGAP1.5a.1	540	III: 5931721-5932788
Transcript:EGAP1.5b.1	EGAP1.5b.1	377	III: 5931836-5932726

Other

2 CDSs

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
CDS:EGAP1.5a	EGAP1.5a	300	III: 5931899-5931918
CDS:EGAP1.5b	EGAP1.5b	327	III: 5931886-5931918

4 RNAi Result

• WBRNAi00107794
• WBRNAi00028231
• WBRNAi00089025
• WBRNAi00061775

25 Allele

• gk964518
• gk175665
• gk175666
• gk175667
• gk175668
• gk964338
• gk964339
• WBVar01264087
• WBVar01264086
• WBVar01264083
• WBVar01264082
• WBVar00056845
• WBVar02030606
• gk903575
• gk903094
• gk524310
• gk867966
• gk689210
• gk871451
• gk389377
• WBVar01566488
• WBVar01995304
• WBVar00269779
• WBVar01952197
• tm3789

1 Chromosome

• WormBase ID: III
• Organism: Caenorhabditis elegans
• Length (nt): 13783801

1 Chromosome Location

• Feature . Primary Identifier: WBGene00271775
• Start: 5931721
• End: 5932788
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

0 Downstream Intergenic Region

20 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly decreased expression in day 3 adult hermaphrodite comparing to in L4 larva daf-16(mu86);glp-1(e2141) animals.	Fold change > 2, FDR < 0.05	WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
	Transcripts that showed significantly decreased expression in day 3 adult hermaphrodite comparing to in L4 larva glp-1(e2141) animals.	Fold change > 2, FDR < 0.05	WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
	Transcripts that showed significantly increased expression in hda-1(ne4752[3xFLAG-Degron-HDA-1]) in gonads dissected from 1-day old adult animals.	Salmon was used to map the mRNA-seq reads with the worm database WS268, and its output files were imported to DESeq2 in R. The differentially expressed genes were filtered by fold change more than 2 and adjusted p-value < 0.05. The scatter plots were generated by the plot function in R.	WBPaper00061479:hda-1(ne4752)_upregulated
	Transcripts that showed significantly increased expression in ilc-17.1(syb5296) comparing to in N2 animals at L4 larva stage.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066594:ilc-17.1(syb5296)_upregulated
	Transcripts that showed significantly increased expression in hda-2(ok1479) comparing to in N2 animals.	DESeq2 (version 1.28.1), FDR < 0.01, fold change > 2.	WBPaper00062159:hda-2(ok1479)_upregulated
	Single-cell RNA-Seq cell group 110_0 expressed in coelomocyte.	scVI 0.6.0	WBPaper00065841:110_0
	Single-cell RNA-Seq cell group 110_1 expressed in mesoderm.	scVI 0.6.0	WBPaper00065841:110_1
	Transcripts enriched in hmc according to single cell RNAseq.	Genes that pass the Bonferroni threshold for multiple comparisons (q < 0.05) are significantly enriched.	WBPaper00061651:hmc_enriched
	Transcripts that showed significantly decreased expression in day 1 adult hermaphrodite comparing to in L4 larva fem-3(q20) animals.	Fold change > 2, FDR < 0.05	WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
	Transcripts that showed significantly decreased expression in day 3 adult hermaphrodite comparing to in L4 larva fem-3(q20) animals.	Fold change > 2, FDR < 0.05	WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
	Transcripts that showed significantly decreased expression in L1 neural cells comparing to in adult neural cells.	DESeq2 (v1.18.1) fold change > 2, P-adj<0.05, using BenjaminiHochberg correction.	WBPaper00060811:L1_vs_adult_downregulated_neural
	Transcripts that showed significantly increased expression in lin-53(RNAi) embryos comparing to control animals.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00067044:lin-53(RNAi)_upregulated
	Single-cell RNA-Seq cell group 1_2 expressed in muscle.	scVI 0.6.0	WBPaper00065841:1_2
	Single-cell RNA-Seq cell group 7_2 expressed in muscle.	scVI 0.6.0	WBPaper00065841:7_2
	Single-cell RNA-Seq cell group 7_4 expressed in muscle.	scVI 0.6.0	WBPaper00065841:7_4
	Single-cell RNA-Seq cell group 23_0 expressed in mesoderm.	scVI 0.6.0	WBPaper00065841:23_0
	Single-cell RNA-Seq cell group 31_0 expressed in gonad.	scVI 0.6.0	WBPaper00065841:31_0
	Single-cell RNA-Seq cell group 38_3 expressed in muscle.	scVI 0.6.0	WBPaper00065841:38_3
	Transcripts enriched in Distal_tip_cell according to single cell RNAseq.	Genes that pass the Bonferroni threshold for multiple comparisons (q < 0.05) are significantly enriched.	WBPaper00061651:Distal_tip_cell_enriched
	Single-cell RNA-Seq cell group 1_1 expressed in muscle.	scVI 0.6.0	WBPaper00065841:1_1

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00271775
• Start: 5931721
• End: 5932788
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 1068

1 Sequence Ontology Term