WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F25B5.2a.1 Sequence Name  F25B5.2a.1
Length (nt)  2671   Chromosome Location  III: 5958779-5962325
Chromosome . Primary Identifier  III Chromosome Location . Start  5958779
Chromosome Location . End  5962325 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F25B5.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00017774 nop-1 F25B5.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F25B5.2a F25B5.2a 2274   III: 5959308-5959343

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F25B5.2a.1 5958779 5962325 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon90568   107   III: 5958779-5958885 Caenorhabditis elegans
Exon90571   37   III: 5959307-5959343 Caenorhabditis elegans
Exon90573   60   III: 5959392-5959451 Caenorhabditis elegans
Exon90577   357   III: 5959500-5959856 Caenorhabditis elegans
Exon90581   342   III: 5959904-5960245 Caenorhabditis elegans
Exon90585   174   III: 5960303-5960476 Caenorhabditis elegans
Exon90591   505   III: 5960531-5961035 Caenorhabditis elegans
Exon90593   131   III: 5961085-5961215 Caenorhabditis elegans
Exon90597   88   III: 5961265-5961352 Caenorhabditis elegans
Exon90601   186   III: 5961409-5961594 Caenorhabditis elegans
Exon90607   684   III: 5961642-5962325 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F25B5.2a.1 5958779 5962325 1

1 Sequence

Length
2671

1 Sequence Ontology Term

Identifier Name Description
transcript