WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F25B5.2a.2 Sequence Name  F25B5.2a.2
Length (nt)  2607   Chromosome Location  III: 5959264-5962325
Chromosome . Primary Identifier  III Chromosome Location . Start  5959264
Chromosome Location . End  5962325 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F25B5.2a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00017774 nop-1 F25B5.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F25B5.2a F25B5.2a 2274   III: 5959308-5959343

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F25B5.2a.2 5959264 5962325 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon90570   80   III: 5959264-5959343 Caenorhabditis elegans
Exon90574   60   III: 5959392-5959451 Caenorhabditis elegans
Exon90578   357   III: 5959500-5959856 Caenorhabditis elegans
Exon90582   342   III: 5959904-5960245 Caenorhabditis elegans
Exon90586   174   III: 5960303-5960476 Caenorhabditis elegans
Exon90592   505   III: 5960531-5961035 Caenorhabditis elegans
Exon90594   131   III: 5961085-5961215 Caenorhabditis elegans
Exon90598   88   III: 5961265-5961352 Caenorhabditis elegans
Exon90602   186   III: 5961409-5961594 Caenorhabditis elegans
Exon90608   684   III: 5961642-5962325 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F25B5.2a.2 5959264 5962325 1

1 Sequence

Length
2607

1 Sequence Ontology Term

Identifier Name Description
transcript