WormMine: Gene WBGene00197906

• WormBase Gene ID: WBGene00197906
• Gene Name: T04C9.7
• Sequence Name: T04C9.7
• Organism: Caenorhabditis elegans
• Automated Description: Enriched in neurons based on RNA-seq and single-cell RNA-seq studies. Is affected by cep-1; adr-1; and daf-2 based on RNA-seq and microarray studies.
• Biotype: SO:0001263
• Genetic Position: :±
• Length (nt): 577

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00197906

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:T04C9.7	T04C9.7	577	III: 5991644-5992220

Other

0 CDSs

0 RNAi Result

10 Allele

• gk964518
• gk964338
• gk964339
• WBVar01264157
• gk659786
• h9388
• gk599769
• gk386834
• gk852102
• gk391683

1 Chromosome

• WormBase ID: III
• Organism: Caenorhabditis elegans
• Length (nt): 13783801

1 Chromosome Location

• Feature . Primary Identifier: WBGene00197906
• Start: 5991644
• End: 5992220
• Strand: -1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrIII_5989492..5991643
• Length (nt): 2152
• Chromosome Location: III: 5989492-5991643
• Organism: Caenorhabditis elegans

9 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Neuronally enriched transcripts according to a comparison of neuronal nuclei IP samples to total nuclei using isolation of nuclei from tagged specific cell types (INTACT) technology.	DESEQ2, fold change > 2 and FDR < 0.01.	WBPaper00062103:neuron_enriched
	Single-cell RNA-Seq cell group 76_0 expressed in neuron.	scVI 0.6.0	WBPaper00065841:76_0
	Single-cell RNA-Seq cell group 117_0 expressed in neuron.	scVI 0.6.0	WBPaper00065841:117_0
	Transcripts that showed significantly decreased expression in daf-2(e1370) comparing to in N2.	Student's t-test, fold change > 2, p-value < 0.05.	WBPaper00055386:daf-2(e1370)_downregulated
	Transcripts significantly enriched in AVK neurons comparing to all cell types at L1 larva stage.	edgeR, FDR < 0.001, fold change > 2.	WBPaper00055565:AVK_enriched
	Transcripts that showed significantly decreased expression in adr-1(tm668) comparing to in N2.	DESeq2, p-value < 0.05 and a fold enrichment log2fold > 0.5.	WBPaper00055226:adr-1(tm668)_downregulated
	ncRNAs with significantly increased expression in cep-1(gk138) than in N2 under normal conditions, according to RNAseq.	ncRNAs with more than 2 fold difference in expression are considered differentially expressed	WBPaper00045380:cep-1(gk138)_upregulated_normal
	Single-cell RNA-Seq cell group 93_0 expressed in neuron.	scVI 0.6.0	WBPaper00065841:93_0
	Single-cell RNA-Seq cell group 14_1 expressed in neuron.	scVI 0.6.0	WBPaper00065841:14_1

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00197906
• Start: 5991644
• End: 5992220
• Strand: -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 577

1 Sequence Ontology Term