WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T04C9.1a.1 Sequence Name  T04C9.1a.1
Length (nt)  3315   Chromosome Location  III: 5993219-6006369
Chromosome . Primary Identifier  III Chromosome Location . Start  5993219
Chromosome Location . End  6006369 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T04C9.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020209 T04C9.1 T04C9.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T04C9.1a T04C9.1a 2646   III: 5993274-5993427

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T04C9.1a.1 5993219 6006369 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon90721   209   III: 5993219-5993427 Caenorhabditis elegans
Exon90722   96   III: 5993505-5993600 Caenorhabditis elegans
Exon90724   290   III: 5994186-5994475 Caenorhabditis elegans
Exon90726   100   III: 5994885-5994984 Caenorhabditis elegans
Exon90728   62   III: 5995390-5995451 Caenorhabditis elegans
Exon90730   75   III: 5995502-5995576 Caenorhabditis elegans
Exon90732   79   III: 5995636-5995714 Caenorhabditis elegans
Exon90734   193   III: 5996270-5996462 Caenorhabditis elegans
Exon90737   158   III: 5997277-5997434 Caenorhabditis elegans
Exon90740   232   III: 6003151-6003382 Caenorhabditis elegans
Exon90745   836   III: 6003432-6004267 Caenorhabditis elegans
Exon90748   52   III: 6004590-6004641 Caenorhabditis elegans
Exon90751   144   III: 6004805-6004948 Caenorhabditis elegans
Exon90753   83   III: 6005251-6005333 Caenorhabditis elegans
Exon90756   706   III: 6005664-6006369 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T04C9.1a.1 5993219 6006369 1

1 Sequence

Length
3315

1 Sequence Ontology Term

Identifier Name Description
transcript