WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C05D10.3a.1 Sequence Name  C05D10.3a.1
Length (nt)  2154   Chromosome Location  III: 6084620-6087755
Chromosome . Primary Identifier  III Chromosome Location . Start  6084620
Chromosome Location . End  6087755 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C05D10.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015479 wht-1 C05D10.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C05D10.3a C05D10.3a 2016   III: 6084758-6084874

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C05D10.3a.1 6084620 6087755 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon90956   255   III: 6084620-6084874 Caenorhabditis elegans
Exon90958   130   III: 6085069-6085198 Caenorhabditis elegans
Exon90960   154   III: 6085241-6085394 Caenorhabditis elegans
Exon90962   229   III: 6085453-6085681 Caenorhabditis elegans
Exon90964   132   III: 6085726-6085857 Caenorhabditis elegans
Exon90966   106   III: 6085901-6086006 Caenorhabditis elegans
Exon90968   137   III: 6086202-6086338 Caenorhabditis elegans
Exon90970   175   III: 6086382-6086556 Caenorhabditis elegans
Exon90973   100   III: 6086601-6086700 Caenorhabditis elegans
Exon90974   313   III: 6086896-6087208 Caenorhabditis elegans
Exon90975   286   III: 6087252-6087537 Caenorhabditis elegans
Exon90976   137   III: 6087619-6087755 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C05D10.3a.1 6084620 6087755 -1

1 Sequence

Length
2154

1 Sequence Ontology Term

Identifier Name Description
transcript