WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C05D10.4a.1 Sequence Name  C05D10.4a.1
Length (nt)  2037   Chromosome Location  III: 6088688-6102862
Chromosome . Primary Identifier  III Chromosome Location . Start  6088688
Chromosome Location . End  6102862 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C05D10.4a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015480 C05D10.4 C05D10.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C05D10.4a C05D10.4a 1698   III: 6088906-6088959

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C05D10.4a.1 6088688 6102862 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon90978   272   III: 6088688-6088959 Caenorhabditis elegans
Exon90980   145   III: 6089012-6089156 Caenorhabditis elegans
Exon90983   119   III: 6089203-6089321 Caenorhabditis elegans
Exon90986   152   III: 6089375-6089526 Caenorhabditis elegans
Exon90989   263   III: 6089583-6089845 Caenorhabditis elegans
Exon90992   109   III: 6089932-6090040 Caenorhabditis elegans
Exon90995   359   III: 6090476-6090834 Caenorhabditis elegans
Exon90999   170   III: 6090889-6091058 Caenorhabditis elegans
Exon91002   52   III: 6094115-6094166 Caenorhabditis elegans
Exon91005   126   III: 6094621-6094746 Caenorhabditis elegans
Exon91008   113   III: 6095433-6095545 Caenorhabditis elegans
Exon91010   157   III: 6102706-6102862 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C05D10.4a.1 6088688 6102862 -1

1 Sequence

Length
2037

1 Sequence Ontology Term

Identifier Name Description
transcript