WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C05D10.3a.1 Sequence Name  C05D10.3a.1
Length (nt)  2154   Chromosome Location  III: 6084620-6087755
Chromosome . Primary Identifier  III Chromosome Location . Start  6084620
Chromosome Location . End  6087755 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C05D10.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015479 wht-1 C05D10.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C05D10.3a C05D10.3a 2016   III: 6084758-6084874

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C05D10.3a.1 6084620 6087755 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon90993   255   III: 6084620-6084874 Caenorhabditis elegans
Exon90995   130   III: 6085069-6085198 Caenorhabditis elegans
Exon90997   154   III: 6085241-6085394 Caenorhabditis elegans
Exon90999   229   III: 6085453-6085681 Caenorhabditis elegans
Exon91001   132   III: 6085726-6085857 Caenorhabditis elegans
Exon91003   106   III: 6085901-6086006 Caenorhabditis elegans
Exon91005   137   III: 6086202-6086338 Caenorhabditis elegans
Exon91007   175   III: 6086382-6086556 Caenorhabditis elegans
Exon91010   100   III: 6086601-6086700 Caenorhabditis elegans
Exon91011   313   III: 6086896-6087208 Caenorhabditis elegans
Exon91012   286   III: 6087252-6087537 Caenorhabditis elegans
Exon91013   137   III: 6087619-6087755 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C05D10.3a.1 6084620 6087755 -1

1 Sequence

Length
2154

1 Sequence Ontology Term

Identifier Name Description
transcript