WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y42G9A.4b.1 Sequence Name  Y42G9A.4b.1
Length (nt)  2543   Chromosome Location  III: 6124149-6133104
Chromosome . Primary Identifier  III Chromosome Location . Start  6124149
Chromosome Location . End  6133104 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y42G9A.4b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021534 mvk-1 Y42G9A.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y42G9A.4b Y42G9A.4b 1845   III: 6124845-6125020

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y42G9A.4b.1 6124149 6133104 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon91051   872   III: 6124149-6125020 Caenorhabditis elegans
Exon91075   154   III: 6125493-6125646 Caenorhabditis elegans
Exon91105   135   III: 6126670-6126804 Caenorhabditis elegans
Exon91133   60   III: 6127038-6127097 Caenorhabditis elegans
Exon91161   214   III: 6127610-6127823 Caenorhabditis elegans
Exon91188   49   III: 6127873-6127921 Caenorhabditis elegans
Exon91227   127   III: 6129342-6129468 Caenorhabditis elegans
Exon91254   139   III: 6129912-6130050 Caenorhabditis elegans
Exon91295   305   III: 6130781-6131085 Caenorhabditis elegans
Exon91325   161   III: 6131587-6131747 Caenorhabditis elegans
Exon91349   327   III: 6132778-6133104 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y42G9A.4b.1 6124149 6133104 -1

1 Sequence

Length
2543

1 Sequence Ontology Term

Identifier Name Description
transcript