WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y42G9A.4o.1 Sequence Name  Y42G9A.4o.1
Length (nt)  1518   Chromosome Location  III: 6124845-6131682
Chromosome . Primary Identifier  III Chromosome Location . Start  6124845
Chromosome Location . End  6131682 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y42G9A.4o.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021534 mvk-1 Y42G9A.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y42G9A.4o Y42G9A.4o 1518   III: 6124845-6125020

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y42G9A.4o.1 6124845 6131682 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon91066   176   III: 6124845-6125020 Caenorhabditis elegans
Exon91090   154   III: 6125493-6125646 Caenorhabditis elegans
Exon91120   135   III: 6126670-6126804 Caenorhabditis elegans
Exon91148   60   III: 6127038-6127097 Caenorhabditis elegans
Exon91176   214   III: 6127610-6127823 Caenorhabditis elegans
Exon91203   49   III: 6127873-6127921 Caenorhabditis elegans
Exon91221   63   III: 6128322-6128384 Caenorhabditis elegans
Exon91242   127   III: 6129342-6129468 Caenorhabditis elegans
Exon91269   139   III: 6129912-6130050 Caenorhabditis elegans
Exon91310   305   III: 6130781-6131085 Caenorhabditis elegans
Exon91322   96   III: 6131587-6131682 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y42G9A.4o.1 6124845 6131682 -1

1 Sequence

Length
1518

1 Sequence Ontology Term

Identifier Name Description
transcript