WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y42G9A.6c.1 Sequence Name  Y42G9A.6c.1
Length (nt)  2136   Chromosome Location  III: 6141999-6149590
Chromosome . Primary Identifier  III Chromosome Location . Start  6141999
Chromosome Location . End  6149590 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y42G9A.6c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021535 wht-7 Y42G9A.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y42G9A.6c Y42G9A.6c 2007   III: 6142123-6142301

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y42G9A.6c.1 6141999 6149590 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon91376   303   III: 6141999-6142301 Caenorhabditis elegans
Exon91384   439   III: 6142340-6142778 Caenorhabditis elegans
Exon91392   302   III: 6142828-6143129 Caenorhabditis elegans
Exon91400   257   III: 6143177-6143433 Caenorhabditis elegans
Exon91408   170   III: 6143807-6143976 Caenorhabditis elegans
Exon91416   96   III: 6144026-6144121 Caenorhabditis elegans
Exon91425   183   III: 6144169-6144351 Caenorhabditis elegans
Exon91442   128   III: 6149067-6149194 Caenorhabditis elegans
Exon91448   109   III: 6149238-6149346 Caenorhabditis elegans
Exon91456   57   III: 6149393-6149449 Caenorhabditis elegans
Exon91461   92   III: 6149499-6149590 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y42G9A.6c.1 6141999 6149590 -1

1 Sequence

Length
2136

1 Sequence Ontology Term

Identifier Name Description
transcript